PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G169500.1
Common NameB456_008G169500, LOC105764389
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 382aa    MW: 42742.8 Da    PI: 8.823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G169500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-065678123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F r  nL+ H r+H
  Gorai.008G169500.1 56 YVCEICNQGFQRDQNLQMHRRRH 78
                        9*********************9 PP

2zf-C2H214.78.9e-05134156123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C +C k +  +s++k H+rt+
  Gorai.008G169500.1 134 WVCDKCFKGYAVQSDYKAHLRTC 156
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-55379No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975678IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035517098128IPR015880Zinc finger, C2H2-like
SMARTSM00355110134161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MLDKTATVSA LPFSSDLLSL TPLDNGKRKR KPPGTPDPEA EVVSLSPQTL LESDRYVCEI  60
CNQGFQRDQN LQMHRRRHKV PWKLVKNETQ EVVKKKVYVC PEPSCLHHNP CHALGDLVGI  120
KKHFRRKHSL NKQWVCDKCF KGYAVQSDYK AHLRTCGTKG HSCDCGRVFS RVESFIEHQD  180
ICSVRGVQHQ FQALQYSRLT SSTTPSIDAN FSLSPPLPIP KSTGTLELQL LPSSSTHLWS  240
WRNSDSASLL KLSIGSTEGN GRETAMEATR LKEFASEQLK LAMREKTHAE KAREEAKREI  300
EMAELEFASA KRIKQQAENE LEKALVLKHQ ATKKITATIM QITCQACRNR FITSMAAVPA  360
ADETSLAMSY MSSATTEGEG E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438389.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotQ9C9X71e-145IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A0D2PW740.0A0A0D2PW74_G
STRINGPOPTR_0008s13980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-135indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]